Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015951687.1_cds_XP_016491643.1_81938
CDS Infomation

[gene=LOC107811264] [db_xref=GeneID:107811264] [protein=E3 ubiquitin-protein ligase COP1-like isoform X2] [protein_id=XP_016491643.1] [location=join(754..1038,1152..1309,1408..1473,1966..2044,2497..2652,2739..2837,3560..3664,3761..3940,4330..4440,4537..4704)] [gbkey=CDS]
Sequence

ATGGAATTGTATAGGGCAAGGGGTAGATATGCAGCAAAGATGAGAATGCTAGTAAATGAT
TCTTCTGCTGTGACAATTCGGCCTTCATTGATAGATAAGCAAGGTAGTGGCATTATTTCT
GGTTCCTCAATTTCACAGCGACAAGGATATGCTGCTTCAGACACTTCACAGAACAGGAAA
ACAGATGCAAGAGCTCTAGAGAATGTTCACAGGACAGATTCCGACTCACAGAATTCTGAT
CAATCTGGACTTGCGACAGCAAGAAAGAGAAGTATCTACGCACAGCTCGATGATATACAA
GGTTATTATTTGCAAAAACGGCGACACTGCACAAAACAGTCACATAGACAGGAAGAAACG
GTAGCAAACGTCATAAACAGAGAAGGTTATTGTGCCGGACTTGAGGATTTTCAATCTGTT
CTATCTACCTTTACACAATACAGTCGGTTGCGGGTTGTTGCTGAACTTAGGCCTGTCGAT
CTTTTCCACTCAGCTAATATTGTCTCAAGTATTGAATTTGATCGAGATGATGAATTTTTT
GCTACAGCTGGCGTGTCGAGAAGAATCAAGGTCTTTGACTTTTCATCAGTGGTAAATGAA
CCAGCTGATGCACAACGTCCTGTTGTTGAAATGTCTTCACGATCCAAACTTAGTTGTCTG
AGCTGGAACAAGTACGCAAAGAACCACATTGCGAGCAGTGACTATGAAGGCATAGTAACC
ATTTGGGATGTGAGCAGTCGCCAGAGTGTGGTGGAGTATGAGGAGCATGAAAAACGAGCA
TGGAGTGTTGATTTCTCTCATACTGATCCTTCTATGCTTGTGTCTGGCAGTGATGATTGC
AAGGTCAAAGTTTGGTGCACGAAGCAGGAGGCAAGTGTTATTAGCATTGACATGAAAGCA
AACATTTGCTCTGTGAAGTACAATCCTCAATCCAGCTTTCATATAGCTGTGGGTTCTGCT
GATAATCATATCCATTATTATGACTTGAGAAATATTAAGCAGCCGCTGCATATTTTCTGT
GGACACCATAAATCTGTTTCATATGTGAAATTTTTATCCAACAATGAGCTGGCGTCTGCA
TCAACGGATGGTACATTGCGTTTGTGGGATGTCAAGGAGAACATTCCACTGCGAAATTAT
AGAGGACATACAAACGAGAAGAACTTTGTGGGTCTTGCAGTAAACAGTGAATACATTGCC
TGTGGCAGTGAAACAAATGAAGTGTTTGTCTATCACAAGGCGATTTCTAAGCCAGCAGCA
TCGCACAAATTTGATTCTGACCAGAATGATCCAGATGAGGACATGGGATCACATTTCATT
AGTTCTGTTTGTTGGAAGCGCGAGAGCCCAACCATTTTAACAGCAAATAGTCAAGGGATC
GTACAAGTGCTTGTTCTTACTGCTTGA

Peptide Sequence

PEP ID

XP_016491643.1
PEP Infomation

PREDICTED: E3 ubiquitin-protein ligase COP1-like isoform X2 [Nicotiana tabacum]
Sequence

MELYRARGRYAAKMRMLVNDSSAVTIRPSLIDKQGSGIISGSSISQRQGYAASDTSQNRK
TDARALENVHRTDSDSQNSDQSGLATARKRSIYAQLDDIQGYYLQKRRHCTKQSHRQEET
VANVINREGYCAGLEDFQSVLSTFTQYSRLRVVAELRPVDLFHSANIVSSIEFDRDDEFF
ATAGVSRRIKVFDFSSVVNEPADAQRPVVEMSSRSKLSCLSWNKYAKNHIASSDYEGIVT
IWDVSSRQSVVEYEEHEKRAWSVDFSHTDPSMLVSGSDDCKVKVWCTKQEASVISIDMKA
NICSVKYNPQSSFHIAVGSADNHIHYYDLRNIKQPLHIFCGHHKSVSYVKFLSNNELASA
STDGTLRLWDVKENIPLRNYRGHTNEKNFVGLAVNSEYIACGSETNEVFVYHKAISKPAA
SHKFDSDQNDPDEDMGSHFISSVCWKRESPTILTANSQGIVQVLVLTA

Transcript Sequence

Gene sequence data has not been registered.